PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.311060.1
Common NameCsa_3G881870, WRKY25
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family WRKY
Protein Properties Length: 351aa    MW: 37659.6 Da    PI: 10.1356
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.311060.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.54.2e-31272329359
                     -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                     D+y+WrKYGqK++kgs++pr+YY+C++  gCp++k+ver+ +dp ++++tYegeH+h+
  Cucsa.311060.1 272 DEYSWRKYGQKPIKGSPYPRGYYKCSTMrGCPARKHVERDPNDPAMLIVTYEGEHRHT 329
                     9************************9877****************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105332.4E-19217268IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.801.7E-32258330IPR003657WRKY domain
PROSITE profilePS5081130.262265331IPR003657WRKY domain
SuperFamilySSF1182904.97E-26268330IPR003657WRKY domain
SMARTSM007741.3E-36270330IPR003657WRKY domain
PfamPF031061.7E-26272328IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009737Biological Processresponse to abscisic acid
GO:0009938Biological Processnegative regulation of gibberellic acid mediated signaling pathway
GO:0010200Biological Processresponse to chitin
GO:0042742Biological Processdefense response to bacterium
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:1990841Molecular Functionpromoter-specific chromatin binding
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MAVDLMSFPK MDDQIAIQEA ASQGLKSMEH LIRLLSHKQS SNHVDCSDLT DATVSKFKKV  60
ISLLNRTGHA RFRRGPVSST SSSSSGSSAH LSQNQAMTLT PTPFTSPPNV PALPFTAPAT  120
VAQPQTKVVA TAANFLSQPQ SMTLDFTRPN ILNSNPKGAD LEFSKETFSV SSSSSFMSSA  180
ITGDGSVSNG KLGTSIFLAP APTASGGKPP LSAAPYKKRC HEHDHSEDLS GKFSGSTSIS  240
GKCHCSKRRK NRMKKTIRVP AISSKIADIP PDEYSWRKYG QKPIKGSPYP RGYYKCSTMR  300
GCPARKHVER DPNDPAMLIV TYEGEHRHTQ SSLPENMAAA GGVALVFESS *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-21258328271WRKY transcription factor 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00464DAPTransfer from AT4G31550Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU9840240.0GU984024.1 Cucumis sativus WRKY protein (WRKY25) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001275528.10.0probable WRKY transcription factor 11-like
SwissprotQ9SV151e-154WRK11_ARATH; Probable WRKY transcription factor 11
TrEMBLE7CEX30.0E7CEX3_CUCSA; Uncharacterized protein
STRINGAT4G31550.11e-151(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13143498
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31550.11e-139WRKY DNA-binding protein 11
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Ling J, et al.
    Genome-wide analysis of WRKY gene family in Cucumis sativus.
    BMC Genomics, 2011. 12: p. 471
    [PMID:21955985]
  4. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]